- Feb 2011 update: eProbalign has been updated and is now faster for
both protein and RNA data and more accurate for RNA. Parameters for
RNA alignment were obtained by cross-validating on RFAM 9.1
seed alignments based on published structure. The standalone code
has been updated to version 1.4 and is available for download.
- Jobs that run for more than 10 hours will be terminated.
- For large datasets (> 100 sequences) we recommend the standalone
PROBALIGN software for local installation, available here
- Please cite S. Chikkagoudar, U. Roshan and D. R. Livesay, eProbalign:
generation and manipulation of multiple sequence alignments using
partition function posterior probabilities, Nucleic Acids Research, Vol 35,
2007, W675-W677 (pdf)